198 lines
6.3 KiB
MySQL
198 lines
6.3 KiB
MySQL
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-- Table definition for fieldseeker.SampleCollection
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-- Includes versioning for tracking changes
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CREATE SCHEMA IF NOT EXISTS fieldseeker;
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CREATE TYPE fieldseeker.samplecollection_notinuit_f_enum AS ENUM (
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'1',
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'0'
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);
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CREATE TYPE fieldseeker.samplecollection_mosquitosampletype_enum AS ENUM (
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'Blood',
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'Tissue',
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'Specimen',
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'Carcass'
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);
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CREATE TYPE fieldseeker.samplecollection_mosquitosamplecondition_enum AS ENUM (
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'Usable',
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'Unusable'
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);
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CREATE TYPE fieldseeker.samplecollection_mosquitosamplespecies_enum AS ENUM (
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'Chicken',
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'Wild bird',
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'Horse',
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'Human'
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);
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CREATE TYPE fieldseeker.samplecollection_notinuisex_enum AS ENUM (
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'M',
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'F',
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'U'
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);
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CREATE TYPE fieldseeker.samplecollection_mosquitoactivity_enum AS ENUM (
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'Routine inspection',
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'Pre-treatment',
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'Maintenance',
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'ULV',
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'BARRIER',
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'LOGIN',
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'TREATSD',
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'SD',
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'SITEVISIT',
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'ONLINE',
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'SYNC',
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'CREATESR',
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'LC',
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'ACCEPTSR',
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'POINT',
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'DOWNLOAD',
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'COMPLETESR',
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'POLYGON',
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'TRAP',
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'SAMPLE',
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'QA',
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'PTA',
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'FIELDSCOUTING',
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'OFFLINE',
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'LINE',
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'TRAPLOCATION',
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'SAMPLELOCATION',
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'LCLOCATION'
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);
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CREATE TYPE fieldseeker.samplecollection_mosquitolabname_enum AS ENUM (
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'Internal Lab',
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'State Lab'
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);
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CREATE TYPE fieldseeker.samplecollection_mosquitositecondition_enum AS ENUM (
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'Dry',
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'Clean',
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'Full',
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'Low'
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);
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CREATE TYPE fieldseeker.samplecollection_notinuiwinddirection_enum AS ENUM (
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'N',
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'NE',
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'E',
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'SE',
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'S',
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'SW',
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'W',
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'NW'
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);
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CREATE TYPE fieldseeker.samplecollection_mosquitotestmethod_enum AS ENUM (
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'RAMP',
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'VecTest',
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'ELISA',
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'RT-PCR'
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);
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CREATE TYPE fieldseeker.samplecollection_mosquitodisease_enum AS ENUM (
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'EEE',
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'WNV',
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'Dengue',
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'Zika'
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);
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CREATE TABLE fieldseeker.samplecollection (
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objectid BIGSERIAL NOT NULL,
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loc_id UUID,
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startdatetime TIMESTAMP,
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enddatetime TIMESTAMP,
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sitecond fieldseeker.samplecollection_mosquitositecondition_enum,
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sampleid VARCHAR(25),
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survtech VARCHAR(25),
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datesent TIMESTAMP,
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datetested TIMESTAMP,
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testtech VARCHAR(25),
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comments VARCHAR(250),
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processed fieldseeker.samplecollection_notinuit_f_enum,
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sampletype fieldseeker.samplecollection_mosquitosampletype_enum,
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samplecond fieldseeker.samplecollection_mosquitosamplecondition_enum,
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species fieldseeker.samplecollection_mosquitosamplespecies_enum,
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sex fieldseeker.samplecollection_notinuisex_enum,
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avetemp DOUBLE PRECISION,
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windspeed DOUBLE PRECISION,
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winddir fieldseeker.samplecollection_notinuiwinddirection_enum,
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raingauge DOUBLE PRECISION,
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activity fieldseeker.samplecollection_mosquitoactivity_enum,
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testmethod fieldseeker.samplecollection_mosquitotestmethod_enum,
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diseasetested fieldseeker.samplecollection_mosquitodisease_enum,
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diseasepos fieldseeker.samplecollection_mosquitodisease_enum,
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reviewed fieldseeker.samplecollection_notinuit_f_enum,
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reviewedby VARCHAR(25),
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revieweddate TIMESTAMP,
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locationname VARCHAR(25),
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zone VARCHAR(25),
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recordstatus SMALLINT,
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zone2 VARCHAR(25),
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globalid UUID,
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created_user VARCHAR(255),
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created_date TIMESTAMP,
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last_edited_user VARCHAR(255),
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last_edited_date TIMESTAMP,
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lab fieldseeker.samplecollection_mosquitolabname_enum,
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fieldtech VARCHAR(25),
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flockid UUID,
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samplecount SMALLINT,
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chickenid UUID,
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gatewaysync SMALLINT,
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creationdate TIMESTAMP,
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creator VARCHAR(128),
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editdate TIMESTAMP,
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editor VARCHAR(128),
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VERSION INTEGER NOT NULL DEFAULT 1,
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PRIMARY KEY (objectid, VERSION)
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);
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COMMENT ON COLUMN fieldseeker.samplecollection.VERSION IS 'Tracks version changes to the row. Increases when data is modified.';
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COMMENT ON COLUMN fieldseeker.samplecollection.startdatetime IS 'Start';
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COMMENT ON COLUMN fieldseeker.samplecollection.enddatetime IS 'Finish';
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COMMENT ON COLUMN fieldseeker.samplecollection.sitecond IS 'Conditions';
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COMMENT ON COLUMN fieldseeker.samplecollection.sampleid IS 'Sample ID';
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COMMENT ON COLUMN fieldseeker.samplecollection.survtech IS 'Surveillance Technician';
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COMMENT ON COLUMN fieldseeker.samplecollection.datesent IS 'Sent';
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COMMENT ON COLUMN fieldseeker.samplecollection.datetested IS 'Tested';
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COMMENT ON COLUMN fieldseeker.samplecollection.testtech IS 'Test Technician';
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COMMENT ON COLUMN fieldseeker.samplecollection.comments IS 'Comments';
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COMMENT ON COLUMN fieldseeker.samplecollection.processed IS 'Processed';
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COMMENT ON COLUMN fieldseeker.samplecollection.sampletype IS 'Sample Type';
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COMMENT ON COLUMN fieldseeker.samplecollection.samplecond IS 'Sample Condition';
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COMMENT ON COLUMN fieldseeker.samplecollection.species IS 'Species';
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COMMENT ON COLUMN fieldseeker.samplecollection.sex IS 'Sex';
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COMMENT ON COLUMN fieldseeker.samplecollection.avetemp IS 'Average Temperature';
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COMMENT ON COLUMN fieldseeker.samplecollection.windspeed IS 'Wind Speed';
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COMMENT ON COLUMN fieldseeker.samplecollection.winddir IS 'Wind Direction';
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COMMENT ON COLUMN fieldseeker.samplecollection.raingauge IS 'Rain Gauge';
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COMMENT ON COLUMN fieldseeker.samplecollection.activity IS 'Activity';
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COMMENT ON COLUMN fieldseeker.samplecollection.testmethod IS 'Test Method';
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COMMENT ON COLUMN fieldseeker.samplecollection.diseasetested IS 'Disease Tested';
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COMMENT ON COLUMN fieldseeker.samplecollection.diseasepos IS 'Disease Positive';
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COMMENT ON COLUMN fieldseeker.samplecollection.reviewed IS 'Reviewed';
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COMMENT ON COLUMN fieldseeker.samplecollection.reviewedby IS 'Reviewed By';
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COMMENT ON COLUMN fieldseeker.samplecollection.revieweddate IS 'Reviewed Date';
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COMMENT ON COLUMN fieldseeker.samplecollection.locationname IS 'Location Name';
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COMMENT ON COLUMN fieldseeker.samplecollection.zone IS 'Zone';
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COMMENT ON COLUMN fieldseeker.samplecollection.recordstatus IS 'RecordStatus';
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COMMENT ON COLUMN fieldseeker.samplecollection.zone2 IS 'Zone2';
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COMMENT ON COLUMN fieldseeker.samplecollection.lab IS 'Lab';
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COMMENT ON COLUMN fieldseeker.samplecollection.fieldtech IS 'Field Tech';
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COMMENT ON COLUMN fieldseeker.samplecollection.samplecount IS 'Sample Count';
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COMMENT ON COLUMN fieldseeker.samplecollection.chickenid IS 'ChickenID';
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COMMENT ON COLUMN fieldseeker.samplecollection.gatewaysync IS 'Gateway Sync';
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-- See insert/insert_samplecollection_versioned.sql for prepared insert statement
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-- Usage notes for versioning:
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-- When inserting a new row, VERSION defaults to 1
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-- When updating a row, insert a new row with the same ID but incremented VERSION
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-- The most recent version of a row has the highest VERSION value
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